Biomonitoring systems designed to protect the integrity of aquatic ecosystems must satisfy two complementary requirements if they are to be used in a successful management program. First, they must generate reliable information with respect to the current biological status of the ecosystem; second, they must be capable of reducing the lag time in the feedback of this information. This paper describes a biomonitoring system, currently being developed, that employs coherent optical spatial filtering techniques to rapidly identify diatoms and process species-abundance information. Preliminary results indicate that the optical problems associated with such a system can be overcome satisfactorily, although investigations are continuing into the problem of interfacing a microscope directly to the optical system. We envision that this system can eventually be employed in a management program along with chemical and physical data to obtain full beneficial use of the ecosystem without damage.